rs30728113 SNP Detail

Summary

• ID
  rs30728113
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154429343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAGAAGAG ATGTGAGATG AGCCCCACAT CATTTCTCCT
  CACTAGATTG TTAACACAGA TCGGATTGCC CTTTTCCCTC TGTGTGGACC TCCAACTTCC
  K
  ATTCCCTTAC ATGTACCTAC ATATATTACA TATTATGCAC TTTGGGTTCT GACTTTTCTA
  TATTGTGTTT AGGGGTATGG GAGTATTTGG AGTCAATGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss45525860	mCV22840554	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					T	G
ss47477693	NES10331239	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	G		G	G	G	G
ss136118437	ENSMUSSNP7034734	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs30728113					SNP	T	T	G	T	G	T	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47477693	NES10331239	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154429343 () rs orientation: forward

Symbol	Name	Function Class
Erich3	glutamate rich 3	Intron
Rr587891	regulatory region 587891	59 bp distal
Rr587892	regulatory region 587892	200 bp distal