rs30722379 SNP Detail

Summary

• ID
  rs30722379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151947835 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AATAC TGTACCCTGG TTGTTAAAAA
  Y
  TTCGCCTTTT TTTTTGAGGC TCATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss46437722	mCV25389761	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss148077975	ENSMUSSNP6753023	ENSEMBL	ENSEMBL_Sanger	r	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs30722379					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151947835 () rs orientation: reverse

Symbol	Name	Function Class
9230110K08Rik	RIKEN cDNA 9230110K08 gene	67 bp downstream
Camta1	calmodulin binding transcription activator 1	1610 bp upstream
Cpgi15375	CpG island 15375	433 bp distal
Gm42357	predicted gene, 42357	within coordinates
Gm57065	predicted gene, 57065	within coordinates
Rr398891	regulatory region 398891	1346 bp downstream
Rr605651	regulatory region 605651	1643 bp distal
Rr605653	regulatory region 605653	1138 bp distal
Rr605654	regulatory region 605654	1572 bp distal
Rr605655	regulatory region 605655	93 bp distal
Tssr40478	transcription start site region 40478	1159 bp downstream
Tssr40479	transcription start site region 40479	1123 bp downstream
Tssr40480	transcription start site region 40480	707 bp downstream
Tssr44794	transcription start site region 44794	1699 bp upstream
Tssr44795	transcription start site region 44795	1617 bp upstream
Tssr44796	transcription start site region 44796	1605 bp upstream