rs30719999 SNP Detail

Summary

• ID
  rs30719999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120680601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAGCTC TCGTGAGAAC
  CCCGGGAGTT TTGGCAGAAC CTTTGTGGGA ACCATATGGC GGCAACTTTA CAGTACATGA
  AACATTTTGA AGTGAGGAAG ACACCACTAT TTCCCAAAGA ATGTCCCTTG TGTGTCTCAG
  TCGGATTGAG GACCTCTGCC AAAGGACAAG AATAAGACTT TCTGGAAACT TAGTGCGAAC
  R
  TAGATGATAT CTAACTTTGA TATATCACAG GTCAGCATTA TAGCCAGAAT AGATCTTACT
  AATTTAAATT AATGAAAAAA GAATGTGCAA TATTTCTCAT ACTCCCTAGT TATGAAGCAC
  CACCCACCAC CCCTCCACCC CGCAAAAACA CAGTTTACTC GTCTTAATGA GGAGTGGCCA
  AATAGATGGT TTGCAATATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45459690	mCV24002933	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss135709338	ENSMUSSNP1859001	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs30719999					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120680601 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	within coordinates
Rr583992	regulatory region 583992	391 bp distal
Rr583993	regulatory region 583993	within coordinates
Tssr35394	transcription start site region 35394	206 bp upstream