rs30718486 SNP Detail

Summary

• ID
  rs30718486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108806893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA CAGCAGGACA CCCAGCCAAG
  Y
  TCCTCCTCCC TGAAGGGTGT GCGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45958658	mCV24063479	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss133510106	ENSMUSSNP2314835	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss321894199	CHEV_6_108779926	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30718486					SNP	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108806893 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9430088B20Rik	RIKEN cDNA 9430088B20 gene			1914 bp upstream
Cpgi17816	CpG island 17816			291 bp distal
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417			1656 bp upstream
Rr399823	regulatory region 399823			1295 bp downstream
Rr636213	regulatory region 636213			1589 bp distal
Rr636214	regulatory region 636214			1248 bp distal
Rr636215	regulatory region 636215			762 bp distal
Rr636216	regulatory region 636216			1838 bp proximal
Tssr58099	transcription start site region 58099			1415 bp downstream
Tssr58100	transcription start site region 58100			1390 bp downstream
Tssr58101	transcription start site region 58101			1374 bp downstream
Tssr58102	transcription start site region 58102			1367 bp downstream
Tssr58103	transcription start site region 58103			1328 bp downstream
Tssr58104	transcription start site region 58104			1316 bp downstream
Tssr58105	transcription start site region 58105			1211 bp downstream
Tssr58106	transcription start site region 58106			1188 bp downstream
Tssr58107	transcription start site region 58107			788 bp downstream
Tssr62395	transcription start site region 62395			1548 bp upstream