rs30715444 SNP Detail

Summary

• ID
  rs30715444
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132389562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCCCGGGTGA GAAAGGGAAG AACTCTGGAT CGGGACACTC ACATGAAGCG
  S
  TGACCCAACC GCAGCTCTTG AGCAGCCTCA GCCGGGAGAA GGAAGGGCCA           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46976756	NES10890566	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30715444					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46976756	NES10890566	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132389562 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aimp1	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1			Intron
				mRNA-UTR
Cpgi13843	CpG island 13843			within coordinates
Rr367561	regulatory region 367561			within coordinates
Rr585442	regulatory region 585442			within coordinates
Rr585443	regulatory region 585443			103 bp distal
Rr585444	regulatory region 585444			73 bp proximal
Rr585445	regulatory region 585445			354 bp proximal
Tbck	TBC1 domain containing kinase			343 bp upstream
Tssr31756	transcription start site region 31756			305 bp upstream
Tssr31757	transcription start site region 31757			358 bp upstream
Tssr35732	transcription start site region 35732			23 bp downstream