rs30714472 SNP Detail

Summary

• ID
  rs30714472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132389537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTGCAC TCTCACTTAA
  AAGGAAACAA GGTAATGCAT TCACCCCCTG CCTCCAGTAG CATGCTCTCC CTCGGCCACG
  TATTCATTGC CCAAACTAAG TTGAATCAAA AGGGGGCACG TGGGTGGAGG TTTTGACCGC
  GCTTCCCACT ACTACACAGA AGGTCAGGTT CTTTTTCCCG GGTGAGAAAG GGAAGAACTC
  Y
  GGATCGGGAC ACTCACATGA AGCGGTGACC CAACCGCAGC TCTTGAGCAG CCTCAGCCGG
  GAGAAGGAAG GGCCAGCCTC CCGCAGTCCC CGGCAGCGAG AAAGGACCCA GGAGGCTGTC
  CCTGATAAAT GCCTGAGCGT TTCACAGTTT CACCGCTCAT CGGCCGTCCG CTGCCTGCGC
  CAGCTCTCTC CCTGTACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46976754	NES10890565	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30714472					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46976754	NES10890565	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132389537 () rs orientation: forward

Symbol	Name	Function Class
Aimp1	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1	Intron
Rr367561	regulatory region 367561	within coordinates
Rr585442	regulatory region 585442	within coordinates
Rr585443	regulatory region 585443	78 bp distal
Rr585444	regulatory region 585444	98 bp proximal
Rr585445	regulatory region 585445	379 bp proximal
Tbck	TBC1 domain containing kinase	368 bp upstream
Tssr31756	transcription start site region 31756	330 bp upstream
Tssr31757	transcription start site region 31757	383 bp upstream
Tssr35732	transcription start site region 35732	48 bp downstream