rs30714470 SNP Detail

Summary

• ID
  rs30714470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132388755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAAACCT TCTATGGCTT
  TCACTCCCCC TGATTAGCCC ACACTCTCTG TCTGCATCAT GAATCCCCTC TCTCAGTTCT
  GAGCCCACAG GCATTGGTCA GACCCCTTCA TACTTTGGTA AGTTTCTGTT GCATGGCCTT
  CGCAATGGCT TGGCCTTATG ACTGACTGTA CTTCTTGAAG GTTTTCTCTA TTGTTAATTC
  Y
  ATTTGTGTCA CCTCCTTCCT AGAAAGCCAT CTTTTCCTTG AGAACCTTCT CTGGCAACCA
  TGTCAAATAA TCTACCTTTT TTTTTTTATG GCTTAATACC TTTTCTGTGC AGTACTTATA
  ATCTAAAATA TTTAAGTATA AAATGCCAAC ACTAAAAAGC GTTTAGTGCT TGTTGCAGGG
  AACCCAAGCT CAGGGCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46976752	NES10890596	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30714470					SNP	T	T	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46976752	NES10890596	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132388755 () rs orientation: forward

Symbol	Name	Function Class
Aimp1	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1	Intron
Cpgi13843	CpG island 13843	730 bp proximal
Rr367561	regulatory region 367561	732 bp upstream
Rr585442	regulatory region 585442	176 bp proximal
Rr585443	regulatory region 585443	683 bp proximal
Rr585444	regulatory region 585444	880 bp proximal
Rr585445	regulatory region 585445	1161 bp proximal
Tbck	TBC1 domain containing kinase	1150 bp upstream
Tssr31756	transcription start site region 31756	1112 bp upstream
Tssr31757	transcription start site region 31757	1165 bp upstream
Tssr35732	transcription start site region 35732	830 bp downstream