rs30714468 SNP Detail

Summary

• ID
  rs30714468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132387824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATTCTAC AGCAACATGG
  TACCTTTAGA CCACTTTAAA TTCCTGTTGC CATTTAACAC ATATGTCACA AGTCAGAAGG
  TAAGGACAAG TAAATACTTT GGTAAATGTG AGGACAATGT GCTCCATAAA CACTCACTGA
  CATTGATCCC ACTGCTAAGT TTTTAAACCA AGCCTTGCTA AAACCCATAG AAGACCTGAG
  R
  CTGTTTCTGG TGAAAGCTCC TATTTATTCT AGATTCTTAT CCCCTTACTG GAGAGCCCTT
  TTTTCTCTTT ACTGATGAAG ACACAGGAAG TTCTAGCCAT ATTAAATGAT GACAATGGGG
  GGAGAAAGTA AAATTGATTA CTATGAAGGG ATAATCCATG CTTTTCTAAT ATTATGACTT
  AATTCAAAAC CTTTTCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46976750	NES10890621	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30714468					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46976750	NES10890621	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132387824 () rs orientation: forward

Symbol	Name	Function Class
Aimp1	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1	Intron
Cpgi13843	CpG island 13843	1661 bp proximal
Rr367561	regulatory region 367561	1663 bp upstream
Rr585442	regulatory region 585442	1107 bp proximal
Rr585443	regulatory region 585443	1614 bp proximal
Rr585444	regulatory region 585444	1811 bp proximal
Tssr35732	transcription start site region 35732	1761 bp downstream