rs30714466 SNP Detail

Summary

• ID
  rs30714466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132387723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATATTCTA CAGCAACATG GTACCTTTAG ACCACTTTAA
  ATTCCTGTTG CCATTTAACA CATATGTCAC AAGTCAGAAG GTAAGGACAA GTAAATACTT
  Y
  GGTAAATGTG AGGACAATGT GCTCCATAAA CACTCACTGA CATTGATCCC ACTGCTAAGT
  TTTTAAACCA AGCCTTGCTA AAACCCATAG AAGACCTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45491698	mCV22640739	ABI	CRAMUS_MOUSE	f	SNP	C	T				T		C
ss46976746	NES10890619	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T		C	C	T	C	T	C	C
ss135913719	ENSMUSSNP4198379	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30714466					SNP	C	T	T	T	T	T	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46976746	NES10890619	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132387723 () rs orientation: forward

Symbol	Name	Function Class
Aimp1	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1	Intron
Cpgi13843	CpG island 13843	1762 bp proximal
Rr367561	regulatory region 367561	1764 bp upstream
Rr585442	regulatory region 585442	1208 bp proximal
Rr585443	regulatory region 585443	1715 bp proximal
Rr585444	regulatory region 585444	1912 bp proximal
Tssr35732	transcription start site region 35732	1862 bp downstream