rs30710277 SNP Detail

Summary

• ID
  rs30710277
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135395879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTAAAAT CAGGGGGAAA
  AAAACCCACT TCAGCAAGGA CCTTACTTTA ATCAAGTTTC TCTTTTTAAG GTCTGACGAA
  CATTAATGCA TTTTTTTTTT GCCACCCAAG AACAATCAGC TGAAGAGTCC TCTAGAAAGC
  CACCCAACTC TATCACCATC TCCATCTTTA GTACTAACCA CCAGTCTGAG CCCCAGTATT
  W
  GATGCCATAG CCATCAAATG TTAATAAACA CCACAAGTTG TTCTCAGCCC TAAAACAACA
  AAAATTTTAG TTAAATATGC TTACTTAGAA AGCTGCAGTG TTGGCCTTTA CTTTTAAAAG
  TTCATTAAAA AAACAAAACA GATTAAATCT AGATGATGAA ATCTTTTTAT CATTTGTCCC
  ACTTAAGTTT TAGACTCGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45458760	mCV25339221	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss135928539	ENSMUSSNP945609	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30710277					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135395879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	536 bp proximal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr398044	regulatory region 398044	19 bp upstream
Rr585766	regulatory region 585766	1292 bp distal
Rr585767	regulatory region 585767	1418 bp proximal
Tssr31841	transcription start site region 31841	987 bp downstream
Tssr31842	transcription start site region 31842	968 bp downstream
Tssr31843	transcription start site region 31843	950 bp downstream
Tssr31844	transcription start site region 31844	915 bp downstream
Tssr31845	transcription start site region 31845	875 bp downstream
Tssr35823	transcription start site region 35823	850 bp upstream
Tssr35824	transcription start site region 35824	336 bp upstream
Tssr35825	transcription start site region 35825	1021 bp downstream
Tssr35826	transcription start site region 35826	1147 bp downstream
Tssr35827	transcription start site region 35827	1156 bp downstream
Tssr35828	transcription start site region 35828	1207 bp downstream
Tssr35829	transcription start site region 35829	1267 bp downstream
Tssr35830	transcription start site region 35830	1293 bp downstream
Tssr35831	transcription start site region 35831	1302 bp downstream
Tssr35832	transcription start site region 35832	1370 bp downstream
Tssr35833	transcription start site region 35833	1394 bp downstream
Tssr35834	transcription start site region 35834	1821 bp downstream