rs30709371 SNP Detail

Summary

• ID
  rs30709371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154427132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAAAGTGC CAACCTTTTC CTGAAGGGAA AGGTATGAAT
  TCCAATGAGC TCTGCATGTA GGGACAGAGG CACACACCCT TATCTTAAAC CAAGCAGCTC
  R
  GACACGATTG TTTTTACAAG TATGTTGTCT GGGTGTTAAT TTATGAGAAT CAATGAAAGT
  ATCTATCATG TAAAATTAGA ATGCTTATGT TTAGGTGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45458464	mCV22840615	ABI	CRAMUS_MOUSE	f	SNP		A					G
ss47477735	NES10331296	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		A	A	A	A	G		A	A	G	A
ss136118389	ENSMUSSNP984758	ENSEMBL	ENSEMBL_Sanger	f	SNP		A											G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30709371					SNP	G	A	G	A	G	A	G	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47477735	NES10331296	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154427132 () rs orientation: forward

Symbol	Name	Function Class
Erich3	glutamate rich 3	Intron
Rr587891	regulatory region 587891	1630 bp proximal
Rr587892	regulatory region 587892	1990 bp proximal