rs30707949 SNP Detail

Summary

• ID
  rs30707949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41441084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTATGTAT CTTGGAGACA TGGCTTCAGT CAAGTTGTAT
  AATCCACATG ACTGTATCTA AAAGAAATCT TTACTTTTGG AGATAAAATG GAATACTTGT
  Y
  CACTTGGTAA TAGAGATTTA AAAAATTGGC ATACTTTTGC ATATTCAAAT CAATAGGACA
  TGCTTATTCT CGTATGCTTG AACGTACTCA TTTGCTATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45458543	mCV24977067	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		T
ss60397848	NES15901451	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C		C	T	C	T		C	C	C	C		C
ss320728694	CHEV_3_41290571	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30707949					SNP	T	T	C	C	T	T	C	C	C	T	C	T	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397848	NES15901451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41441084 () rs orientation: forward

Symbol	Name	Function Class
Gm6069	predicted gene 6069	454 bp downstream
Platr4	pluripotency associated transcript 4	1032 bp downstream
Rr575951	regulatory region 575951	1594 bp proximal