rs30705684 SNP Detail

Summary

• ID
  rs30705684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87417353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA CCTGGACCTT GGGTCATAAG
  Y
  CAGTTCATGG GTAAGAGACT GAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45458329	mCV22946003	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30705684					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87417353 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397760	regulatory region 397760	1509 bp downstream
Rr579501	regulatory region 579501	1531 bp distal
Rr579502	regulatory region 579502	1688 bp distal
Rr579503	regulatory region 579503	1622 bp distal
Rr579504	regulatory region 579504	608 bp distal
Rr579505	regulatory region 579505	892 bp distal
Rr579506	regulatory region 579506	862 bp distal
Rr579507	regulatory region 579507	301 bp distal
Rr579508	regulatory region 579508	1962 bp proximal