rs30699114 SNP Detail

Summary

• ID
  rs30699114
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154427591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGAGGA GGGTGCTACT
  GGACAGGTGT TATTTTGTGT ATACACTGAT CCTGGGTCTC TGTTGAGACA CTGAATAATC
  TTACATAACA GCTTGGAATG GGGACTTAAA TAATGGATTC TGTCCCTGCT GTAATGTAGT
  CTCCCCTTAG CTTGATCAGT CTGAGAGAAC TGTTCAAGAC TGAAGAGTGG CTTTGTTAGG
  M
  GCTACCATGA GGTGCAGCAG CCAGAGGGAT TTATCCAGGC TATCAAAGAT CTGTCTTCAG
  TGGTGTGTGA TTCTGTGAAA CGAGAATAGG TTTTAGGTTT CCGTAGAGAA TAAATAAAAG
  CATCCGTTTG TACTTTTGGA ATAGCTCACT CGCTGAAATG TGGCATTTGT TAATTTTTTT
  TGCTTCTTGA AAATTAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MSM/Ms
ss45454976	mCV22840603	ABI	CRAMUS_MOUSE	f	SNP	A	C			A	C
ss47477729	NES10331298	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A		C	C
ss136118398	ENSMUSSNP1255291	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	MSM/Ms
rs30699114					SNP	A	C	A	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47477729	NES10331298	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154427591 () rs orientation: forward

Symbol	Name	Function Class
Erich3	glutamate rich 3	Intron
Rr587891	regulatory region 587891	1171 bp proximal
Rr587892	regulatory region 587892	1531 bp proximal