rs30682191 SNP Detail

Summary

• ID
  rs30682191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151947303 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGAAG GCGCAGTACT TTGCAGCTCT
  Y
  CTGGCCCGGG CTTGTGTCTG CAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46433875	mCV25389763	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30682191					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151947303 () rs orientation: reverse

Symbol	Name	Function Class
9230110K08Rik	RIKEN cDNA 9230110K08 gene	within coordinates
Camta1	calmodulin binding transcription activator 1	1078 bp upstream
Cpgi15375	CpG island 15375	within coordinates
Gm42357	predicted gene, 42357	within coordinates
Gm57065	predicted gene, 57065	within coordinates
Rr398891	regulatory region 398891	814 bp downstream
Rr605651	regulatory region 605651	1111 bp distal
Rr605652	regulatory region 605652	1674 bp distal
Rr605653	regulatory region 605653	606 bp distal
Rr605654	regulatory region 605654	1040 bp distal
Rr605655	regulatory region 605655	within coordinates
Tssr40478	transcription start site region 40478	627 bp downstream
Tssr40479	transcription start site region 40479	591 bp downstream
Tssr40480	transcription start site region 40480	175 bp downstream
Tssr44794	transcription start site region 44794	1167 bp upstream
Tssr44795	transcription start site region 44795	1085 bp upstream
Tssr44796	transcription start site region 44796	1073 bp upstream