rs30667884 SNP Detail

Summary

• ID
  rs30667884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50542193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCATATGCCC AGTTATATAA ATCTAAGTAT AAAACCATTT AGTAGGTTTG AGGTGACATG
  CCCCTATTTA TGGAAAGTAA AACATTGCTA ATTAAGTCCA ATCTTATCTT GAGAAAGGGA
  GAGCCGTGGT AGCATGTATA CAACTGGAAC TGTTGCTTTA ATAAAGACCG TACCCACTTT
  ATGACAAGTC AGTTTTACTT AAATCAGGAC TGTCCAACAA AAACATTGCT AGCCATTCAT
  GATCTGAATT TGGTGTGTGA ATTAAATTAT GGTGTACATT AAAAGCCATG AGACATTTGT
  Y
  TTGTAATAAA TAAGGCAGTG GAATTACTCA TTAGTAGCCT TTTTAAGATA AGCTATTAGG
  TCTGCCCTTT CTCCCTTCTT CTTAATTCCA GCGAAGATCA TTTTTGTTCC AGGGATGTAC
  TTTTTGGGAT TCTCCAAATA CTCCATCAGG GTATCCTCTC CCCAGGTGAT GCCTAAACAG
  AAAGAGATGC AGAGGTTAAG TGTTTTACAC ACCTGGTAAT TCTGCACTGG TTAACCCAAG
  CAACCTGTGC TGTGGCTGAC AGCAGCTCCC CCCGTTACCT TTGTTCTTGT TGGCATCTGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45952660	mCV24538746	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30667884					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50542193 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	1430 bp upstream
Cpgi17392	CpG island 17392	812 bp proximal
Cycs	cytochrome c, somatic	mRNA-UTR
Rr630033	regulatory region 630033	539 bp proximal
Rr630034	regulatory region 630034	1315 bp proximal
Rr630035	regulatory region 630035	1345 bp proximal
Rr630036	regulatory region 630036	1550 bp proximal
Rr630037	regulatory region 630037	1856 bp proximal
Tssr56423	transcription start site region 56423	1507 bp upstream
Tssr60918	transcription start site region 60918	1322 bp downstream
Tssr60919	transcription start site region 60919	1350 bp downstream