rs30667354 SNP Detail

Summary

• ID
  rs30667354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50543239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCGGTCT CATTAGGAGG
  TTAAGTCTCT TCTCTCTTGC TTTAGTCCGG CACGGGAAGG CGAGGGAGGA CTGGGGAAGG
  AACCGTCTCA CTCTCACGTT GAGATCCCAG GGGTGACTAC GACTTTACAA ACCCACCCTC
  CCAGATGCTT AATCAGGAAA AGAACTGGCC CAGTCCTGAA GGAACAGCAG CTTCTGCTCT
  Y
  AGAAGGGGCG GCGGGCGAGT TCCTTCTAGA ACTCCGGGCC CCGGTCCTAC ACCCACGCCG
  CCTCCAGCCG TGCCACAGTT CTGCATGGCT TTGTAGGTTA GGCCTGCCCC GGCCTCCTCG
  CCCCGTTCCC GGTCCGCATC CCCGTCGCGC GCTCACCGTT CCGGGCTGGT CAACACCACG
  AACGTTCGGA CTCGAAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45953631	mCV24539789	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss133182246	ENSMUSSNP7012617	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30667354					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50543239 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	384 bp upstream
Cpgi17392	CpG island 17392	within coordinates
Cycs	cytochrome c, somatic	Intron
Rr630033	regulatory region 630033	within coordinates
Rr630034	regulatory region 630034	269 bp proximal
Rr630035	regulatory region 630035	299 bp proximal
Rr630036	regulatory region 630036	504 bp proximal
Rr630037	regulatory region 630037	810 bp proximal
Tssr56423	transcription start site region 56423	461 bp upstream
Tssr60918	transcription start site region 60918	276 bp downstream
Tssr60919	transcription start site region 60919	304 bp downstream