rs30660627 SNP Detail

Summary

• ID
  rs30660627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79134139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCAGATGTCA GGGCAGCCAT CAGAAGAGTC AAATGCTAAC AAGAACTGGC AAGGGAAAGG
  AAGCTTTTAT AGAAAGGGGC AGGAAATCAA TTAGTACAGC ACATGGAAAG CAGTGTGAAA
  ACACTCATAA AAACAGAACA CAAGCTGGCA TGGTGGCACA CGCCTTTGAT CCCAGCACTT
  GGGAGGAAGA GGCAGGTGAA TTTCTGAGTT CAAGGCCAGC CTGGTCTACA GAGTGAGTTC
  CAGGACAGCC AAGGCTACAC AGAGAAACCC TGTCTTGAAA AACCCAAAAA AAAAAAAAAA
  R
  AAAAAAAAAA AAAAAAAGAA AAAAAGAAAA CCACAGAACA CGACTACCAC AGGACCCAGC
  ACTGTGCATG CATAGGAAGG AGCTGAAGTC AGCGTGATAA GGGGATACTA TCACAACAGC
  CAAGGCATGC ACGCAACCCA AATGCTCACT GACAGGTGAA CAGACAGAAA ATGTCACACA
  CACACACACA CATATACAGA CACACTGACA TACACACAGA CACACAGACA GACACACAGA
  CACACACACA GACCACAGAC ATACACACAG ACACACACAC AGACACACAT ACACAGACAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J
ss45452868	mCV24559349	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J
rs30660627					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79134139 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
Gm66403	predicted gene, 66403	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr578489	regulatory region 578489	444 bp proximal