rs30657522 SNP Detail

Summary

• ID
  rs30657522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138558707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT ACTCCTCTGA ACTCTTCCCA
  R
  CTGCCCCCTC CCAATAACTT TCATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45452639	mCV23602360	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss135957702	ENSMUSSNP5053774	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	A
ss320981667	CHEV_3_138515910	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30657522					SNP	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138558707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398073	regulatory region 398073			1073 bp upstream
Rr586212	regulatory region 586212			501 bp distal
Rr586213	regulatory region 586213			170 bp proximal
Rr586214	regulatory region 586214			936 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant