rs30639290 SNP Detail

Summary

• ID
  rs30639290
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129730829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGCTAAT AACATTTAGG
  TGTTCAGAAT TATCAAATTG TCTCTGAAAA ATGAATTATG ATTCTTTGGG ACATTAAAAA
  GGAGGCTGGG GATGTAAGGG GTTTCGTTTA GTGGGAGAAC ACCTGCCCAA CATGTATAAG
  GGCCTGGGCT CAAATACTCA GACCACAGAA AAAAATTATT AATTAAAATA GTCAGATCAC
  K
  GTCTGAGAAC AGCACCTGAA TATAGACTTG GTATTTTTCA AAACCAATAA CTTTTATACA
  CATTCAAATG AGTAGAAATA TCATCTACTA TCTCAGACAA GATATTTTCT CTATCTATCT
  GTAAAGTTCA GAGCCTGCAT ACATGTATTC TGGCATCCAA ATACTCTTTG TATAGACACA
  CCCACTTATT CAAATCAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46969019	NES10884310	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30639290					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46969019	NES10884310	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129730829 () rs orientation: forward

Symbol	Name	Function Class
Mcub	mitochondrial calcium uniporter dominant negative beta subunit	Intron
Rr585114	regulatory region 585114	698 bp proximal