rs30639289 SNP Detail

Summary

• ID
  rs30639289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129730571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGTTAAT CCAGGAAAGT
  AGGAACAACA AGCTTCTGAC AGAAGCCTTT GGAGGACGCT TTAATTACTG TGCTCCACAA
  AGCTGCCTGT GACGCAAGTC TCAGCCTGGG TGCTGTAATT TGCCCTCACC ACACCCACAG
  AAACGCCAGC TACTCTCTTC AGGGTCGCTC AGTTGTATTG CACGCAGAGC ACTAGATCAC
  R
  TAATTTGCTT TAGAAAGATT TAAGATACAA CCTGGAAATT GGTTTAGGAA AAGTCTTGGT
  TGCTAATAAC ATTTAGGTGT TCAGAATTAT CAAATTGTCT CTGAAAAATG AATTATGATT
  CTTTGGGACA TTAAAAAGGA GGCTGGGGAT GTAAGGGGTT TCGTTTAGTG GGAGAACACC
  TGCCCAACAT GTATAAGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46969017	NES10884348	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30639289					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46969017	NES10884348	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129730571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13819	CpG island 13819	788 bp distal
Mcub	mitochondrial calcium uniporter dominant negative beta subunit	Intron
Rr585114	regulatory region 585114	956 bp proximal
Tssr31664	transcription start site region 31664	1801 bp downstream