rs30621166 SNP Detail

Summary

• ID
  rs30621166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:68128800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTTGAGTG TGGGATTTTT AACTCTCTAG GTACTTTTTA
  AAATAACTCT ATCAACCAGG AGATTTGCAT ATTGCTCCCT AGGGACAACC TCTTCTTGCA
  R
  GTGCAGGGTA AAAGCTCACT CCTCTTTCTG TCTTGATTAC TTTTGACTCT CCATATCAAG
  TTCGCAGAAT GAGGTTCTCT GCTCAGCTTC TGGGGCTGCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47965486	NES11887633	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30621166					SNP	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47965486	NES11887633	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:68128800 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Igkv2-116	immunoglobulin kappa variable 2-116	69 bp upstream
Tssr56917	transcription start site region 56917	38 bp upstream