rs30620564 SNP Detail

Summary

• ID
  rs30620564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50543372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTCCCA GATGCTTAAT
  CAGGAAAAGA ACTGGCCCAG TCCTGAAGGA ACAGCAGCTT CTGCTCTCAG AAGGGGCGGC
  GGGCGAGTTC CTTCTAGAAC TCCGGGCCCC GGTCCTACAC CCACGCCGCC TCCAGCCGTG
  CCACAGTTCT GCATGGCTTT GTAGGTTAGG CCTGCCCCGG CCTCCTCGCC CCGTTCCCGG
  Y
  CCGCATCCCC GTCGCGCGCT CACCGTTCCG GGCTGGTCAA CACCACGAAC GTTCGGACTC
  GAAGACAGAC GTCCCGCGCT CTAGCCCAAG GACACGCCGG CCCGCGCCTA TGTACCGGTG
  TCGGTGCAAC CACACTTGTT CCGCCCGTCC GCGGCCCGAC GTGCGGTAGC GCCGTCTGCT
  GCGCCGTGAC GTAACCGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45948281	mCV24539791	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss133182254	ENSMUSSNP4302725	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30620564					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50543372 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	251 bp upstream
Cpgi17392	CpG island 17392	within coordinates
Cycs	cytochrome c, somatic	Intron
Rr630033	regulatory region 630033	within coordinates
Rr630034	regulatory region 630034	136 bp proximal
Rr630035	regulatory region 630035	166 bp proximal
Rr630036	regulatory region 630036	371 bp proximal
Rr630037	regulatory region 630037	677 bp proximal
Tssr56423	transcription start site region 56423	328 bp upstream
Tssr60918	transcription start site region 60918	143 bp downstream
Tssr60919	transcription start site region 60919	171 bp downstream