rs30620428 SNP Detail

Summary

• ID
  rs30620428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129422993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGTAAG GGTGGCATAG
  GCTTGCCGAA ACACGTTAAG TTATGTCATG GACCTGTTAT GAGTACGGTT TTCTGGAAAT
  GTGTCCTTAT TGCTAGAGTA AGGAATCCAC TTGTGAGGGT GAGCTGAGTG AATCCGTGAC
  TAGCGGCCAC CAGCTCACAA ACTGGAGTAT ATTCTTCTTG AGGAAGACAG GTCACCCTTC
  Y
  ATCTGGGATT CCTAATATTT TTAGTCCAAG ATCAATAATT ATGTGGCTTT AGTGGAACTG
  AGTTGAATTG TGAAATCAGA AGGTACAAAT GTTCTTTTTT TTTTTTTTTG TCTTCTTTAA
  ACAGAGGCGA GAGTGTGTAG ATTTATGGGA GACTTCTCCG GTCTGTTCTG ACACTAGTGT
  TTTGTAAGCT CATCAGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46966207	NES10875094	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30620428					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966207	NES10875094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129422993 () rs orientation: forward

Symbol	Name	Function Class
Elovl6	ELOVL fatty acid elongase 6	Intron
Rr585052	regulatory region 585052	1763 bp proximal