rs30617047 SNP Detail

Summary

• ID
  rs30617047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129359900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAGTGGA TTCTGCTCTG
  CCCTGCTGTG GTAGGAGGCT GGGGCTTGGA AAGAGGCATG CAGATTACAG TTATGAAAGA
  AGGAAGGCAG GCAGAAAGAC TGGAAAGTCC TCTTACATTC ATGTAACATA GTGTCAGCCC
  CCTCCCTGTG TGAGAGAGCA GAGGGAGGGC GGGGGAAGTG CACTGTGTCT ATAAATGACT
  R
  GGACTTTCAT AGCAGTGACT TTTGGGCTCA TACCTGCCCT GGTCCTCTGG CTCACTTCCA
  TTCTCAGAAA TATTTGTCTT TTTCTTAATC TGTGTATCTA GTTCTATTAT TAAAAACAAC
  AACAAAACAT GATAATTTGT TTAAAAACAA ACAAACAACC CAATTTTCCC CTAAATGTTA
  ACTGCTCAGC CCAAAGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46965513	NES10878291	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30617047					SNP	A	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46965513	NES10878291	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129359900 () rs orientation: forward

Symbol	Name	Function Class
Elovl6	ELOVL fatty acid elongase 6	Intron
Gm66250	predicted gene, 66250	within coordinates
Rr585032	regulatory region 585032	1028 bp distal
Rr585033	regulatory region 585033	within coordinates