rs30616978 SNP Detail

Summary

• ID
  rs30616978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129425497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGATTTG GTATGACTCA
  GGAAAATGGA AAATGATTCT GGGCTGTTTC ATCAGAAGAA CTCTATTTGC ATCAAAAGGC
  AAGGCTCTAA CTAAATAGTA ATAGCAAAGT CCTTGGAGTC ATGGTTGGAC CTTCCGGAAC
  CTCAGGGTAT GTTATGGGAA ACCAGCATAC TCAATGTGTG TACTAAGGAC AATAACTTTG
  R
  TATGGCTCTG AGTAGCACTG CTCAGAACCA TTGAAGGGAG CTAGTTACCC TCAGCTTCTA
  CCATCCTGAA CATGAGTTCT GTAAAAGACT CGGTGTAAAT TTACGTGGCT ATTGTTTTCA
  AGACTTCATG ACAGATCGTT CTCCCTTTCT TACACTCCTC CCAAAGTAAT CAGCCCTACT
  GAGACTCTCC AGCGTACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46966269	NES10875002	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30616978					SNP	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966269	NES10875002	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129425497 () rs orientation: forward

Symbol	Name	Function Class
Elovl6	ELOVL fatty acid elongase 6	Intron
Rr585052	regulatory region 585052	491 bp distal