rs30615245 SNP Detail

Summary

• ID
  rs30615245
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17110349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCCATGG AATCTCCTCT
  CCAGTTACAG CTGGATAGGA AGGAAGGCAA GGGGACTGGA TTTTAGGAAG ATGGAAAAAT
  CAGCACAAGT GTTGTATGAA AATCCATGTG TTTGTTGAGG TCATCACACA ACAACAACAA
  CAACAACAAA AGGGAAGAAA GCATGAGCCA GGGACTGACA TTATCAAAGA ACGTGGAGAA
  M
  ATTTCTGAAG TTTAACAGAA AATGGAGACT CATATGTACT CAAAGATCCC ACATCCTTGG
  ATTATGTGGG GATATAATCA CACACTCCAG CACTCTAGCC TGAAGTGCCC TTTTTCCCTC
  TCGCTGTACT ATCGAATGCT CAAGTAGCTT TGTCTAATTA GTTTGCCCTT TCATTGGGAG
  CATGCCATTG GAGTCGCTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45946782	mCV22741998	ABI	CRAMUS_MOUSE	f	SNP		C						A
ss47808630	NES11712342	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A		A	A	C	A	A	C
ss133009945	ENSMUSSNP6618952	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30615245					SNP	C	C	A	A	A	C	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808630	NES11712342	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17110349 () rs orientation: forward

Symbol	Name	Function Class
Gm4876	predicted gene 4876	within coordinates
Gm53251	predicted gene, 53251	within coordinates
Rr626766	regulatory region 626766	743 bp distal
Rr626767	regulatory region 626767	330 bp proximal