rs30613314 SNP Detail

Summary

• ID
  rs30613314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79051686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTACAAAG GAGCAGTAAT CTTTCCTGTG GCACTAAAAC
  AATACAGTGT GCTTTCACCA CCAATTAACA AATGTTAAGG AGTCAGAAGT GTACCACCGA
  Y
  GGTTTCATTG CCAAATCAAT AGCCAGAGCC CCCACCCTCC CACCCACCTC CACGTGCATT
  CCTTGCCAGA TTCCCATGGG CCAGAACCTC TTATAATGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45448163	mCV25348402	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		C
ss60421102	NES15922954	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	T		T		T	T		T	T	T	T		T
ss135368223	ENSMUSSNP3320774	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320810211	CHEV_3_78948301	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30613314					SNP	C	C	T	C	C	T	T	T	T	C	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421102	NES15922954	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79051686 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr578466	regulatory region 578466			within coordinates
Rr578467	regulatory region 578467			588 bp proximal
Rr578468	regulatory region 578468			1486 bp proximal
Tssr33630	transcription start site region 33630			1413 bp upstream
Tssr33631	transcription start site region 33631			27 bp downstream
Tssr33632	transcription start site region 33632			1533 bp downstream