rs30609335 SNP Detail

Summary

• ID
  rs30609335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153616790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA TACTCTTAGT CTCCAAGTGC
  Y
  AACCTCAGGT GAATTAACCA AAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss47465209	NES10335610	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C		T		C
ss321031764	CHEV_3_153574117	CHEVERUD	SCREENING_POP	f	SNP						C		C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs30609335					SNP	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47465209	NES10335610	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153616790 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13963	CpG island 13963			1429 bp proximal
Gm24494	predicted gene, 24494			457 bp downstream
Gm43400	predicted gene 43400			1942 bp upstream
Rabggtb	Rab geranylgeranyl transferase, b subunit			Intron
				Noncoding-Transcript-Variant
Rr587793	regulatory region 587793			1441 bp distal
Rr587794	regulatory region 587794			982 bp proximal
Rr587795	regulatory region 587795			1846 bp proximal
Rr587796	regulatory region 587796			1953 bp proximal
Snord45b	small nucleolar RNA, C/D box 45B			542 bp upstream
Snord45c	small nucleolar RNA, C/D box 45C			976 bp downstream
Tssr36248	transcription start site region 36248			1046 bp downstream
Tssr36249	transcription start site region 36249			1788 bp downstream
Tssr36250	transcription start site region 36250			1813 bp downstream