rs30608382 SNP Detail

Summary

• ID
  rs30608382
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153618329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCC CACGGTCCGC GGATAAGATC
  M
  CAGGCCTCGA GAAGTGCAGA AAACG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47465206	NES10335603	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	C	C	A		C	A	C	A		C
ss321031765	CHEV_3_153575656	CHEVERUD	SCREENING_POP	f	SNP							A					A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30608382					SNP	A	C	A	C	C	A	A	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47465206	NES10335603	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153618329 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13963	CpG island 13963			within coordinates
Gm24494	predicted gene, 24494			1002 bp upstream
Gm43400	predicted gene 43400			403 bp upstream
Rabggtb	Rab geranylgeranyl transferase, b subunit			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr587794	regulatory region 587794			57 bp distal
Rr587795	regulatory region 587795			307 bp proximal
Rr587796	regulatory region 587796			414 bp proximal
Snord45c	small nucleolar RNA, C/D box 45C			503 bp upstream
Tssr36248	transcription start site region 36248			484 bp upstream
Tssr36249	transcription start site region 36249			249 bp downstream
Tssr36250	transcription start site region 36250			274 bp downstream