rs30608379 SNP Detail

Summary

• ID
  rs30608379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153618559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT GCCTCCGCGC ACCGCAGCGA
  Y
  GGTGCTCTCA CCATGTCCGA CCGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss45467160	mCV23502609	ABI	CRAMUS_MOUSE	f	SNP	T		C		C
ss47465203	NES10335604	PERLEGEN	MM_PANEL2	f	SNP				T	C		C	C		T
ss136114989	ENSMUSSNP6485315	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321031766	CHEV_3_153575886	CHEVERUD	SCREENING_POP	f	SNP						C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30608379					SNP	T	T	C	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47465203	NES10335604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153618559 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13963	CpG island 13963			within coordinates
Gm24494	predicted gene, 24494			1232 bp upstream
Gm43400	predicted gene 43400			173 bp upstream
Rabggtb	Rab geranylgeranyl transferase, b subunit			Coding-NonSynonymous
				Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr587794	regulatory region 587794			287 bp distal
Rr587795	regulatory region 587795			77 bp proximal
Rr587796	regulatory region 587796			184 bp proximal
Snord45c	small nucleolar RNA, C/D box 45C			733 bp upstream
Tssr36248	transcription start site region 36248			714 bp upstream
Tssr36249	transcription start site region 36249			19 bp downstream
Tssr36250	transcription start site region 36250			44 bp downstream