rs30608376 SNP Detail

Summary

• ID
  rs30608376
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153618759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC TCCGCGGTCA CGATGCAGCC
  S
  GCTACGAGTC TGCCTGAAGG ACCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45495382	mCV23502608	ABI	CRAMUS_MOUSE	f	SNP	C	C	G					G		G
ss47465200	NES10335605	PERLEGEN	MM_PANEL2	f	SNP				C	G	C	G		G	G	C		G	G	G		G
ss136114992	ENSMUSSNP2360951	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							G
ss321031767	CHEV_3_153576086	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30608376					SNP	C	C	G	C	G	C	G	G	G	G	C	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47465200	NES10335605	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153618759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13963	CpG island 13963	within coordinates
Gm24494	predicted gene, 24494	1432 bp upstream
Gm43400	predicted gene 43400	within coordinates
Rabggtb	Rab geranylgeranyl transferase, b subunit	156 bp upstream
Rr587794	regulatory region 587794	487 bp distal
Rr587795	regulatory region 587795	17 bp distal
Rr587796	regulatory region 587796	within coordinates
Snord45c	small nucleolar RNA, C/D box 45C	933 bp upstream
Tssr36248	transcription start site region 36248	914 bp upstream
Tssr36249	transcription start site region 36249	162 bp upstream
Tssr36250	transcription start site region 36250	132 bp upstream