rs30595373 SNP Detail

Summary

• ID
  rs30595373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79053750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TATATCAGCG GCTGTAGGTT AAGCAAGTCT CAGAGGGATG GAATCCATTG ATTGCTGACT
  CCAAATAATA TCACTGAAGA CAGGGTGGGA AAACGGAGCA AGGACTTACT TGAACAGCTT
  TGAACTAAAA TATGAATTTT TTTTTAACCA AGGTGGGGAG AAAGGAATCA ATGTGACCTC
  TGCCCCACCC TCAAGTATTA TTGTGCCATA GTAAATAAGA CTGTCTTAAA ATTTATAAAA
  TGCAGGCTTA GCAAGCTTTG TTAAATTTAG AAGATGAAAT CACACACACA CACACACACA
  Y
  ACACACACAC ACACACACAC ACACACACGC ACGCACGCAC AGATGCACAT ATGGTCGTGT
  CAATAATATT ATAATAAACC ACCTGGGTTG TTTTTTTTTT TAAACAAACC AAACTTCTAG
  AGGTGGAACT GAAATTAATG AAGAAATGTT ATTCTCCCAC GGTCTTAATT TCACCTACGC
  ACACAGGTTA CCTGGGAGGA GGCTGCATTA CAGCTGACGA GGAATAAAGA CACTTCCATC
  AGCTCTCACA AGCAGCTACA CTTTTGAATG GAAGAGAGGA CAGAAAGCAG TTATGGAAAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45444342	mCV25348380	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs30595373					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79053750 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				Noncoding-Transcript-Variant
Rr578466	regulatory region 578466			1937 bp distal
Rr578467	regulatory region 578467			976 bp distal
Rr578468	regulatory region 578468			78 bp distal
Tssr33632	transcription start site region 33632			513 bp upstream
Tssr33633	transcription start site region 33633			1058 bp downstream