rs30560522 SNP Detail

Summary

• ID
  rs30560522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:62300005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGCCCCAC CTTTATGCAT TGCCTGCACA AGCTCCAAGA
  GCCCGTGAGT TCTGAGTTGT TGCATAGAGA TTTAAGTTTC AATAAAGATC CCCGTTGGAG
  Y
  CCAGTACACT GTGAGCAACT TGGTCAGTGT GATCATCCTT AAACGAGAGT AGAAATCTAT
  GGAACAAGAA ACAATGGCTG GGGCTTGGTT GCACTGCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45443428	mCV22845634	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss51531950	NES14683712	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	C	C	C	C	C	C	C
ss135231343	ENSMUSSNP4207273	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30560522					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51531950	NES14683712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62300005 () rs orientation: forward

Symbol	Name	Function Class
Arhgef26	Rho guanine nucleotide exchange factor 26	Intron
Rr375083	regulatory region 375083	818 bp downstream
Rr577516	regulatory region 577516	1763 bp proximal