rs30555561 SNP Detail

Summary

• ID
  rs30555561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150999171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGAGAAG CCATGACACA
  TCGCTTTCTT TCTAATGTTT ATTTGTTTAA GATTTTGAAA ACTATTGTCA GAACAGTATA
  TTCTGAAGCT GAATCGCAGC CGTCTGCCTT AGAAGTAAAA TTCACACTGA ATTATTTAAT
  TAGTTCTATA CCAGATAAAT TATGTTTGGT GTTTTCTGAA TCAAAACAAC TCTTATCAGG
  R
  CATTTGATGT GGTTCTTAGT AGATACCAGA TTGTTTAATC CATGCTACTC AACACGTTGC
  TGTGTTTAGA TTTGTTGCTA CAAGGATGAT TCCGTGGCAG TTTTATTAAT GTTTATTATT
  TGCATGTCTA TGTTCCCGTG TATCTGGTTA TACAATGCCT GCAGGCACAC GAACCATGCC
  TTATTTAGAA GCCAGTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47460115	NES10334799	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	A
ss136092097	ENSMUSSNP4259250	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30555561					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47460115	NES10334799	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150999171 () rs orientation: forward

Symbol	Name	Function Class
4930555A03Rik	RIKEN cDNA 4930555A03 gene	628 bp upstream
Rr587386	regulatory region 587386	471 bp proximal
Rr587387	regulatory region 587387	913 bp proximal
Rr587388	regulatory region 587388	1595 bp proximal
Tssr1093	transcription start site region 1093	985 bp upstream
Tssr1094	transcription start site region 1094	997 bp upstream
Tssr32380	transcription start site region 32380	607 bp upstream
Tssr32381	transcription start site region 32381	669 bp upstream
Tssr32382	transcription start site region 32382	695 bp upstream