rs30555558 SNP Detail

Summary

• ID
  rs30555558
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150999208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTGTT TAAGATTTTG
  AAAACTATTG TCAGAACAGT ATATTCTGAA GCTGAATCGC AGCCGTCTGC CTTAGAAGTA
  AAATTCACAC TGAATTATTT AATTAGTTCT ATACCAGATA AATTATGTTT GGTGTTTTCT
  GAATCAAAAC AACTCTTATC AGGGCATTTG ATGTGGTTCT TAGTAGATAC CAGATTGTTT
  W
  ATCCATGCTA CTCAACACGT TGCTGTGTTT AGATTTGTTG CTACAAGGAT GATTCCGTGG
  CAGTTTTATT AATGTTTATT ATTTGCATGT CTATGTTCCC GTGTATCTGG TTATACAATG
  CCTGCAGGCA CACGAACCAT GCCTTATTTA GAAGCCAGTG GAGTCTTCCT CTCTTTCCAT
  CTTTATGGGG TATCTGGTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47460112	NES10334800	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A		A	A	T	A
ss136092103	ENSMUSSNP487192	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30555558					SNP	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47460112	NES10334800	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150999208 () rs orientation: forward

Symbol	Name	Function Class
4930555A03Rik	RIKEN cDNA 4930555A03 gene	591 bp upstream
Rr587386	regulatory region 587386	434 bp proximal
Rr587387	regulatory region 587387	876 bp proximal
Rr587388	regulatory region 587388	1558 bp proximal
Tssr1093	transcription start site region 1093	948 bp upstream
Tssr1094	transcription start site region 1094	960 bp upstream
Tssr32380	transcription start site region 32380	570 bp upstream
Tssr32381	transcription start site region 32381	632 bp upstream
Tssr32382	transcription start site region 32382	658 bp upstream