rs30554660 SNP Detail

Summary

• ID
  rs30554660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151001041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGAGAG AAGCAGGAAA
  TGGGGTCTGA GGCTGAAGGT TCAGATGATA AAATGCCCCT CGGGAAGATA ACGAAATGCT
  TCATCCGATG GTGGCCCAAG ACACCTCTTA AAATCTAAGG AAATCGTTTC CCTTTTAAAA
  AGCTGCTTTG TGGAAATAAC AAGTGAGATC TTTTCCTGCT GTTTGTCTCT CTGCCTGAAT
  Y
  CGGACATATT TTCTCTCACA GATGTCAATC TTTTGCTAAA AGTCTATAAA TGATATTTCT
  TTTAATAGTC CTAAAACATA AACTACTGTT TCCTCCAACT CTTTCTAGGT TCCCAGAATG
  TTTCCATGGT CTTATTCTAT TACAATGTTT GAAACTTTAG TAATATTAAG AAATCCATTC
  TCCACATGAG TCCATCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47460103	NES10334803	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30554660					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47460103	NES10334803	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151001041 () rs orientation: forward

Symbol	Name	Function Class
4930555A03Rik	RIKEN cDNA 4930555A03 gene	within coordinates
Rr587386	regulatory region 587386	958 bp distal
Rr587387	regulatory region 587387	825 bp distal
Rr587388	regulatory region 587388	within coordinates
Tssr1093	transcription start site region 1093	875 bp downstream
Tssr1094	transcription start site region 1094	858 bp downstream
Tssr32380	transcription start site region 32380	1226 bp downstream
Tssr32381	transcription start site region 32381	1186 bp downstream
Tssr32382	transcription start site region 32382	1161 bp downstream