rs30554054 SNP Detail

Summary

• ID
  rs30554054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150998525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTTTAT ACATTCTATG
  ACTACCGTAT ATCCTCAGCC CCTACCATGG TGTTGACAGT TTCTCCAGAG CCACCTTCTG
  CTTGGTATGT GACTGACTGA CATTTGCCAA GTGATGTATA TACCAATCTC TTATCTAACT
  TTAAGTAATT GAATAAAGTA GGTTTAACAG TGTTGGATTG TCATCATCTA TAACTGAACA
  Y
  AAGGAAGCCA ACGTTGCAGA GATGAGCTAT ATGATGCTAC TTCAGAGGCT GCTTTTGAAA
  GATTCATGTT AAGAAATGTT TATGTATAAT ATGTATGTGT ATCATATTTT ATGTTCCTCA
  AACTTTGACT TACATTTTGA AGTAAAATGT ATTATAATGT CTATATTCAT GAATTATATT
  AAGGCTGATT AATAAAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47460124	NES10334796	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30554054					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47460124	NES10334796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150998525 () rs orientation: forward

Symbol	Name	Function Class
4930555A03Rik	RIKEN cDNA 4930555A03 gene	1274 bp upstream
Rr587386	regulatory region 587386	1117 bp proximal
Rr587387	regulatory region 587387	1559 bp proximal
Tssr1093	transcription start site region 1093	1631 bp upstream
Tssr1094	transcription start site region 1094	1643 bp upstream
Tssr32380	transcription start site region 32380	1253 bp upstream
Tssr32381	transcription start site region 32381	1315 bp upstream
Tssr32382	transcription start site region 32382	1341 bp upstream