rs30554006 SNP Detail

Summary

• ID
  rs30554006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138565224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG GGTGCTGTTC GGACATCCGC
  Y
  AGTCAGCTCT TCCTTCCTTC ATGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45440566	mCV23602305	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		C
ss47001108	NES10875654	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C		C	C	C	T		C	C		T
ss135957735	ENSMUSSNP3557553	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss320981678	CHEV_3_138522427	CHEVERUD	SCREENING_POP	f	SNP												T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30554006					SNP	T	C	C	C	T	C	C	C	C	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001108	NES10875654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138565224 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			within coordinates
Rr586215	regulatory region 586215			1904 bp distal
Rr586216	regulatory region 586216			795 bp distal
Rr586217	regulatory region 586217			within coordinates
Rr586218	regulatory region 586218			1013 bp proximal
Rr586219	regulatory region 586219			1041 bp proximal
Rr586220	regulatory region 586220			1507 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr1062	transcription start site region 1062			1054 bp upstream
Tssr32014	transcription start site region 32014			1026 bp upstream