rs30552749 SNP Detail

Summary

• ID
  rs30552749
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87823914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC AGTGCCTGCT TGGGCTATTA
  W
  ACAAAATGGC CATGCTGAAC ACTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45440255	mCV23484231	ABI	CRAMUS_MOUSE	f	SNP		A			T
ss51575549	NES14667428	PERLEGEN	MM_PANEL2	f	SNP	T		A	T		A	T	A	A	T	T
ss135468765	ENSMUSSNP4256848	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30552749					SNP	T	A	A	T	T	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575549	NES14667428	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87823914 () rs orientation: forward

Symbol	Name	Function Class
Gm64606	predicted gene, 64606	1818 bp downstream
Hdgf	heparin binding growth factor	475 bp downstream
Rr579572	regulatory region 579572	572 bp proximal
Tssr29850	transcription start site region 29850	1662 bp downstream
Tssr29851	transcription start site region 29851	1527 bp downstream
Tssr29852	transcription start site region 29852	1512 bp downstream
Tssr29853	transcription start site region 29853	1424 bp downstream
Tssr29854	transcription start site region 29854	1280 bp downstream
Tssr29855	transcription start site region 29855	1095 bp downstream
Tssr29856	transcription start site region 29856	1059 bp downstream
Tssr29857	transcription start site region 29857	1035 bp downstream
Tssr29858	transcription start site region 29858	1004 bp downstream
Tssr29859	transcription start site region 29859	972 bp downstream
Tssr29860	transcription start site region 29860	824 bp downstream
Tssr29861	transcription start site region 29861	802 bp downstream