rs30550543 SNP Detail

Summary

• ID
  rs30550543
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54972399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAAAAAT TTCTTAGGGC
  AGAAATCTAG GACACTCTGA ATCCATTTCT TTAAATCATG CCCTATATAT AGGTAAGAAA
  ACAACGTGGG TTCAGGCGTC CATCAAATTT AGTTCCTACT AATCCTAGCT ACATGGGAGG
  TTTCAAAGCC TGAGCTAACA AATTTAAGTC AGAGAAACCC ATCTCAGAAA ACTACTGTGG
  W
  GAAGCCATTG AAAAAGGCAC GTGACACAAA TCTCTGCTCT CCTCCACAGG CACCCACAAG
  GGTGAGCACA CAAACACTTA CATACATGCA GATGTGCACA CACACAAATT ATCCAGGAAA
  ATAGAGTGTA ATACAGTAGA AATGTTTGGT AATCATGAAT TTTTATAATT CATCCATATA
  AAATTATATA CAGAAAAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46959804	NES10820322	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30550543					SNP	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46959804	NES10820322	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54972399 () rs orientation: forward

Symbol	Name	Function Class
4931419H13Rik	RIKEN cDNA 4931419H13 gene	within coordinates
Rr576886	regulatory region 576886	253 bp distal
Rr576887	regulatory region 576887	506 bp distal
Rr576888	regulatory region 576888	352 bp distal
Rr576889	regulatory region 576889	1238 bp proximal