rs30548289 SNP Detail

Summary

• ID
  rs30548289
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95858844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA GTTTTGTTTT GTTGTTTTTG
  K
  TTTTTTTTCG AGACAGGGTT TCTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45439448	mCV25061968	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss320841254	CHEV_3_95755455	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs30548289					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95858844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	42 bp distal
Gm56819	predicted gene, 56819	241 bp upstream
Gm65572	predicted gene, 65572	within coordinates
Rr375411	regulatory region 375411	within coordinates
Rr581095	regulatory region 581095	252 bp distal
Rr581096	regulatory region 581096	194 bp distal
Rr581097	regulatory region 581097	within coordinates
Rr581098	regulatory region 581098	1566 bp proximal
Tssr30663	transcription start site region 30663	446 bp downstream
Tssr30664	transcription start site region 30664	165 bp downstream
Tssr34570	transcription start site region 34570	496 bp upstream