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rs30548289 SNP Detail
Summary
  • ID
    rs30548289
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:95858844 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GGCTA GTTTTGTTTT GTTGTTTTTG
    K
    TTTTTTTTCG AGACAGGGTT TCTCT                                      
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
DBA/2J
LG/J
SM/J
ss45439448 mCV25061968 ABI CRAMUS_MOUSE f SNP T T G
ss320841254 CHEV_3_95755455 CHEVERUD SCREENING_POP f SNP G T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
DBA/2J
LG/J
SM/J
rs30548289 SNP T T G G T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:95858844 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13530 CpG island 13530 42 bp distal
Gm56819 predicted gene, 56819 241 bp upstream
Gm65572 predicted gene, 65572 within coordinates
Rr375411 regulatory region 375411 within coordinates
Rr581095 regulatory region 581095 252 bp distal
Rr581096 regulatory region 581096 194 bp distal
Rr581097 regulatory region 581097 within coordinates
Rr581098 regulatory region 581098 1566 bp proximal
Tssr30663 transcription start site region 30663 446 bp downstream
Tssr30664 transcription start site region 30664 165 bp downstream
Tssr34570 transcription start site region 34570 496 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory