rs30546840 SNP Detail

Summary

• ID
  rs30546840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83899291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGG AATTCAGGTT TTCAGCAGAG
  Y
  GGAAAAGCAA GCCCCAGCCT TCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45440191	mCV23526115	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135419352	ENSMUSSNP3886854	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30546840					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83899291 () rs orientation: forward

Symbol	Name	Function Class
Rr578944	regulatory region 578944	227 bp proximal
Rr578945	regulatory region 578945	785 bp proximal
Rr578946	regulatory region 578946	1477 bp proximal
Tmem131l	transmembrane 131 like	Intron