rs30513337 SNP Detail

Summary

• ID
  rs30513337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138447110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAA CTGCCGGGTA CCTGCTCACC
  Y
  GTGCTTCTCA AAGTTTCCAC TCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45438356	mCV25331762	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135956715	ENSMUSSNP5797453	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320981110	CHEV_3_138404313	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30513337					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138447110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13879	CpG island 13879	365 bp proximal
Rr367566	regulatory region 367566	1738 bp upstream
Rr586188	regulatory region 586188	356 bp proximal
Rr586189	regulatory region 586189	857 bp proximal
Rr586190	regulatory region 586190	983 bp proximal
Tspan5	tetraspanin 5	499 bp upstream
Tssr32003	transcription start site region 32003	879 bp upstream
Tssr32004	transcription start site region 32004	974 bp upstream