rs30511799 SNP Detail

Summary

• ID
  rs30511799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:123359713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAC TTTCGAAAAG CCAAGTTAAA
  Y
  TATCCTGTTA ATTAGACATA GACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46414500	mCV22312143	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T
ss50807905	NES14200818	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	C	T	T	C	T
ss137078470	ENSMUSSNP369645	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30511799					SNP	C	C	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50807905	NES14200818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123359713 () rs orientation: forward

Symbol	Name	Function Class
Gm57036	predicted gene, 57036	1042 bp upstream
n-TRacg2	nuclear encoded tRNA arginine 2 (anticodon ACG)	1151 bp upstream
Rr401759	regulatory region 401759	950 bp downstream
Rr689406	regulatory region 689406	1053 bp distal
Rr689407	regulatory region 689407	756 bp distal
Rr689408	regulatory region 689408	within coordinates
Sacm1l	SAC1 suppressor of actin mutations 1-like (yeast)	Intron
Tssr87925	transcription start site region 87925	892 bp downstream
Tssr87926	transcription start site region 87926	811 bp downstream
Tssr87927	transcription start site region 87927	789 bp downstream
Tssr92139	transcription start site region 92139	1037 bp upstream