rs30509988 SNP Detail

Summary

• ID
  rs30509988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156266524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT CCTCCAACTC TGCATCCCAG
  Y
  AAGGCCCGCC CATCCCTCCC GTTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45437563	mCV23137088	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss136128447	ENSMUSSNP5794570	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321033457	CHEV_3_156223851	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30509988					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156266524 () rs orientation: forward

Symbol	Name	Function Class
4930570G19Rik	RIKEN cDNA 4930570G19 gene	within coordinates
Cpgi13974	CpG island 13974	within coordinates
Negr1	neuronal growth regulator 1	mRNA-UTR
Rr587959	regulatory region 587959	within coordinates
Rr587960	regulatory region 587960	756 bp proximal
Rr587961	regulatory region 587961	1093 bp proximal
Rr587962	regulatory region 587962	1218 bp proximal
Tssr32476	transcription start site region 32476	905 bp upstream
Tssr32477	transcription start site region 32477	1063 bp upstream
Tssr32478	transcription start site region 32478	1208 bp upstream
Tssr32479	transcription start site region 32479	1254 bp upstream
Tssr32480	transcription start site region 32480	1784 bp upstream
Tssr32481	transcription start site region 32481	1898 bp upstream
Tssr36286	transcription start site region 36286	860 bp downstream