rs30508779 SNP Detail

Summary

• ID
  rs30508779
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90417308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTAGACC AGACTGGCTT CGAACTCACA AAGATCCACC
  TCCTGACCCC CCCTAACCCC GCCCCTCCCA GTACTGGGAT TTAAGACCCA CACTGGACTC
  W
  TCTACATCCT TTTATAGGGA CTGCCTCTAG AAGATGTGGC TAGTTTTAGG GTGGGTCTTT
  TTACCTCAAG TAATCCAATA AAGCAAATCT GTATCCCCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45437154	mCV23476231	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss135476755	ENSMUSSNP5164738	ENSEMBL	ENSEMBL_Sanger	f	SNP				T
ss320837923	CHEV_3_90313923	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30508779					SNP	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90417308 () rs orientation: forward

Symbol	Name	Function Class
Chtop	chromatin target of PRMT1	Noncoding-Transcript-Variant
Cpgi13465	CpG island 13465	232 bp distal
Gm56783	predicted gene, 56783	within coordinates
Rr375350	regulatory region 375350	1379 bp upstream
Rr397813	regulatory region 397813	324 bp downstream
Rr580381	regulatory region 580381	895 bp distal
Rr580382	regulatory region 580382	1078 bp distal
Rr580383	regulatory region 580383	13 bp distal
S100a1	S100 calcium binding protein A1	1033 bp downstream
Tssr30207	transcription start site region 30207	896 bp downstream
Tssr30208	transcription start site region 30208	315 bp downstream
Tssr34236	transcription start site region 34236	1938 bp upstream
Tssr34237	transcription start site region 34237	1270 bp upstream
Tssr34238	transcription start site region 34238	495 bp upstream
Tssr34239	transcription start site region 34239	473 bp upstream
Tssr34240	transcription start site region 34240	1132 bp downstream