rs30503301 SNP Detail

Summary

• ID
  rs30503301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137851987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGG ATTTAAATGA AGATTGATTT
  Y
  GGTCAATGCT AAGAATTTTG CGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45436636	mCV24271145	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss135949213	ENSMUSSNP5585585	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320978588	CHEV_3_137809190	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30503301					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137851987 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	1258 bp upstream
Rr375797	regulatory region 375797	1418 bp downstream
Rr398069	regulatory region 398069	996 bp downstream
Rr586087	regulatory region 586087	848 bp distal
Rr586088	regulatory region 586088	1110 bp distal
Trmt10a	tRNA methyltransferase 10A	Intron