rs30498140 SNP Detail

Summary

• ID
  rs30498140
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54538419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAAACAC AGTTATCTGG
  GAGTTCAAAG TCATGGTTGG CTACACAGAG TTGGTAGCCA ACCTGCCTAT GTAAGACCCC
  ATCTTAAAGT ATGTATGTAT GTATGTATGT ATGTATGTAT GTATGTATAA GATTTAAAGC
  AAGGGCTGCA CACGTAACCT AAGAGAACCA ACAGTCTCAG CACATGCTTG CCATCCCTTA
  K
  AACAACTGAG AGATGGCGTA AAGTTCACAG ACATTTCAGC CACATAAGAA CTTCAGCACA
  GTTCCAAGCC AGACTCCTTC TCAAAAACAA GTGAACGACC AATAGAAACA TCTATTCTGT
  CTCTGCCTTG TAAGACACAG AACACCAAAC AAGGCAGCCA GGATAGCCCA CCCAGGCTAT
  CTATGTCCAT TGTTGACAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	MOLF/EiJ
ss46954930	NES10815657	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	MOLF/EiJ
rs30498140					SNP	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46954930	NES10815657	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54538419 () rs orientation: forward

Symbol	Name	Function Class
B020017C02Rik	RIKEN cDNA B020017C02 gene	1883 bp downstream
Rr576819	regulatory region 576819	447 bp distal