rs30491347 SNP Detail

Summary

• ID
  rs30491347
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:95738787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAC ATACTGGGTT GTTGTTGTTG
  K
  TGGTGGTGGT GGTAGTGGCT TTTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46414066	mCV23540357	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss136829846	ENSMUSSNP5194401	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss323104511	CHEV_9_95757153	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30491347					SNP	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95738787 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700065D16Rik	RIKEN cDNA 1700065D16 gene			Intron
				Noncoding-Transcript-Variant
Atr	ataxia telangiectasia and Rad3 related			863 bp upstream
Rr368834	regulatory region 368834			676 bp upstream
Rr401608	regulatory region 401608			1788 bp upstream
Rr684880	regulatory region 684880			1372 bp distal
Rr684881	regulatory region 684881			within coordinates
Rr684882	regulatory region 684882			840 bp proximal
Rr684883	regulatory region 684883			1127 bp proximal
Tssr86577	transcription start site region 86577			894 bp upstream
Tssr86578	transcription start site region 86578			960 bp upstream
Tssr86579	transcription start site region 86579			1210 bp upstream
Tssr90940	transcription start site region 90940			825 bp downstream
Tssr90941	transcription start site region 90941			1130 bp downstream
Tssr90942	transcription start site region 90942			1147 bp downstream